| ProteinMPNN |
proteingen.models.ProteinMPNN |
Foundry (via rc-foundry[all]) |
Structure (required) |
(B, L, 22) logits |
| LigandMPNN |
coming soon |
dauparas/LigandMPNN |
Structure + ligands |
Sequence logits |
| ESMC (300m/600m) |
proteingen.models.ESMC |
EvolutionaryScale/esm |
None (masked LM) |
(B, L, 64) logits |
| ESM3 |
proteingen.models.ESM3 |
EvolutionaryScale/esm |
Structure (atom37 coords) |
(B, L, 64) logits |
| ESM Forge API |
proteingen.models.ESMForgeAPI |
EvolutionaryScale Forge |
Structure (ESM3 only) |
(B, L, 64) logits |
| DPLM-2 |
proteingen.models.DPLM2 |
bytedance/dplm |
None (masked diffusion) |
(B, L, 8229) logits |
| Frame2seq |
proteingen.models.Frame2seq |
dakpinaroglu/Frame2seq |
Structure (pdb_path, chain_id) |
(B, L, 22) logits |
| Dayhoff |
coming soon |
microsoft/Dayhoff |
None (masked LM) |
Sequence logits |
| ProGen3 |
proteingen.models.ProGen3 |
Profluent-AI/progen3 |
None (autoregressive LM) |
(B, L, 134) logits |
| EvoDiff |
coming soon |
microsoft/evodiff |
None (discrete diffusion) |
Sequence logits |
| SaProt |
coming soon |
westlake-repl/SaProt |
Structure (Foldseek tokens) |
Sequence logits |
| AMPLIFY |
coming soon |
chandar-lab/AMPLIFY |
None (masked LM) |
Sequence logits |