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ProteinGen

FASTA Utilities

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ishan-gaur/proteingen

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ProteinGen

ishan-gaur/proteingen

Home
Setup
Examples
Examples
Models
Models
- Overview
- ESMC
- ESM3
- DPLM-2
- ProGen3
- Frame2seq
- ESM Forge API
- ProteinMPNN
- StabilityPMPNN
Workflows
Workflows
- Overview
- Workflows
  Workflows
  - ProteinGuide
  - Continued Pretraining
- Modules — Data
  Modules — Data
- Modules — Models
  Modules — Models
  - Fine-tuning Generative Models
  - Training Predictors
- Modules — Evaluation
  Modules — Evaluation
  - Likelihood Curves
Contributing
Reference
Reference
- Design Philosophy
- Data
  Data
- Models
  Models
- Sampling
  Sampling
  - Overview
  - Samplers
  - Helpers
  - Gotchas
- Evaluation
  Evaluation

FASTA Utilities¶

Helpers for reading FASTA files and stripping alignment gaps.

See Data reference → FASTA utilities.

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Questions? Comments? Reach out to ishang@berkeley.edu.